Resources

Software, teaching material, presentations, tutorials and other reusable scholarly resources.

Open resources for mosquito research, quantitative vector biology and reproducible scientific workflows, with links to software, documentation, teaching tools and interactive applications. The collection grows as new resources become available, while those already listed may evolve through further development.

Software

• Panpreposterous — Build manuscript PDFs from Markdown using a containerised Pandoc/LaTeX toolkit.
  Repository and documentation · Latest release

• NCBI BioProject Archiver — Archive reproducible BioProject metadata snapshots and download verified, lossless SRA data, with manifests and optional FASTQ conversion.
  Repository and documentation · Latest release

• ENA Project Archiver — Archive ENA raw sequencing data and metadata with a reproducible, provenance-preserving CLI and resumable, verified downloads.
  Repository and documentation · Latest release

• NCBI Nuccore Archiver — Archive immutable NCBI Nucleotide/nuccore record snapshots and reproducible collections.
  Repository and documentation · Latest release

• Fieldnote Academic — Minimalist slide theme for Obsidian Slides Extended and Reveal.js, supporting scientific talks, teaching, figures, code, acknowledgements, and clickable DOI references.
  Repository and documentation · Latest release

• Fieldnote Gallery — Minimalist photographic gallery theme for Obsidian Slides Extended and Reveal.js, with horizontal contact sheets, full-screen photography, academic captions, and scientific hotspots.
  Repository and documentation · Latest release

Educational materials

• Panpreposterous workshop — Introductory workshop slides for Panpreposterous v1.4.3.
  View slides in English · Voir les diapositives en français

• Vectorial Capacity — Explore classical malaria vectorial capacity, mosquito bionomics, and Ross–Macdonald transmission thresholds in an interactive R Shiny application.
  Launch interactive explorer · Source code and documentation

Research tools

• Data protocols — Contracts and R utilities for reproducible scientific data curation: validate XLSX/ODS workbooks, preserve provenance, standardise coordinates, and resolve place names with OpenStreetMap.
  Repository and documentation